MODERN RESEARCH DIRECTIONS IN BIOMINERALOGY
DOI:
https://doi.org/10.30970/min.76.09Keywords:
biomineralogy, biomineralization, biogenic minerals, microbial biomineralization pathological mineralization, biomimetic materials, hydroxylapatite, crystallochemistry of biogenic phases, nanostructure of mineralsAbstract
Biomineralogy is currently one of the most dynamic interdisciplinary fields, integrating the methodological approaches of mineralogy, geochemistry, molecular biology, medicine, and materials science. Its relevance is driven by the rapid development of high-precision analytical methods and by the need for a deeper understanding of the fundamental processes governing the interaction between living systems and mineral matter throughout Earth’s geological history. This article summarizes current research directions in biomineralogy and analyses the main trends in the development of this field. Particular attention is given to biomineralization mechanisms as processes of inorganic solid-phase formation under the direct influence of biological factors. The essential differences between biologically induced mineralization (BIM), characteristic mainly of microbial systems, and biologically controlled mineralization (BCM), typical of higher organisms, are examined. The role of organic matrices, including specific proteins and polysaccharides, in nucleation, oriented crystal growth, and the spatial organization of crystals is analysed, as these factors ensure the formation of biogenic minerals with unique hierarchical architectures and specific physicochemical properties. The paper considers the principal natural model systems, including biogenic calcium carbonates (calcite, aragonite, and vaterite in the skeletons of invertebrates and coccolithophores), calcium phosphates (particularly hydroxyapatite in bone tissue), as well as biogenic opal in diatoms and magnetite in magnetotactic bacteria. Special attention is paid to microbial biomineralization as an important factor in the geochemical transformation of the environment, to pathological mineralization in the human body, and to biomimetic approaches to the design of new functional ma terials. Modern biomineralogy is of great importance for the reconstruction of palaeoecological conditions, the development of regenerative medicine, and the study of biogeochemical processes. The prospects for a transition toward multiscale investigations of matter at the micro-, nano-, and atomic levels using SEM, TEM, XRD, infrared spectroscopy, and synchrotron radiation are outlined. It is concluded that the integration of these approaches provides the foundation for understanding the regularities of mineral formation in living and non-living nature and for revealing the role of biota in global geochemical cycles.
References
Arshynnikov R. S., Kulygina V. N., Drohomyretska M. S., Poberezhna H. M., Polyanyk N. Y., Sukhomlynova T. Y. Morphological study of hard dental tissue condition with various types of dental deposits. Reports of Morphology. 2024. Vol. 30. No. 4. P. 5–11. https://doi.org/10.31393/morphology-journal-2024-30(4)-01
Bartholdy B. P., Velsko I. M., Gur-Arieh S., Fagernäs Z., Warinner C., Henry A. G. Assessing the validity of a calcifying oral biofilm model as a suitable proxy for dental calculus. bioRxiv. 2023. https://doi.org/10.1101/2023.05.23.541904
Bazin D., Carpentier X., Brocheriou I., Dorfmüller P., Aubert S., Chappard C., Thiaudière D., Reguer S., Waychunas G., Jungers P., Daudon M. Revisiting the localisation of Zn²⁺ cations sorbed on pathological apatite calcifications made through X-ray absorption spectroscopy. Biochimie. 2009. Vol. 91. No. 10. P. 1294–1300. https://doi.org/10.1016/j.biochi.2009.05.009
Benzerara K., Miot J., Morin G., Ona-Nguema G., Skouri-Panet F., Férard C. Significance, mechanisms and environmental implications of microbial biomineralization. Comptes Rendus Geoscience. 2011. Vol. 343. No. 2–3. P. 160–167. https://doi.org/10.1016/j.crte.2010.09.002
Branson O., de Nooijer L. J. Calcium carbonate biomineralisation: Insights from trace elements. Elements. 2025. Vol. 21. No. 2. P. 105–111. https://doi.org/10.2138/gselements. 21.2.105
Cölfen H. Biomineralization: A crystal-clear view. Nature Materials. 2010. Vol. 9. No. 12. P. 960–961. https://doi.org/10.1038/nmat2911
DiCecco L.-A., Gao R., Gray J. L., Kelly D. F., Sone E. D., Grandfield K. Liquid transmission electron microscopy for probing collagen biomineralization. Nano Letters. 2023. Vol. 23. No. 21. P. 9760–9768. https://doi.org/10.1021/acs.nanolett.3c02344
Eltarahony M., Jestrzemski D., Hassan M. A. A comprehensive review of recent advancements in microbial-induced mineralization: Biosynthesis and mechanism, with potential implementation in various environmental, engineering, and medical sectors. Science of the Total Environment. 2025. Vol. 978. Art. 179426. https://doi.org/10.1016/j.scitotenv.2025.179426
Guo J., Gao F., Zhang F., Zhao X., Zhao R. Biomineralization-driven advances in materials science and biomedical engineering. JACS Au. 2025. Vol. 5. No. 9. P. 4134–4154. https://doi.org/10.1021/jacsau.5c00669
Hasan A., Chuvilin A., Van Teijlingen A., Rouco H., Parmenter C., Venturi F., Fay M., Greco G., Pugno N. M., Ruben J., Edwards-Gayle C. J. C., Myers B., Dreveny I., Cowieson N., Winter A., Gamea S., Walboomers X. F., Hussain T., Rodríguez-Cabello J. C., Rawson F., Tuttle T., Elsharkawy S., Banerjee A., Habelitz S., Mata A. Biomimetic supramolecular protein matrix restores structure and properties of human dental enamel. Nature Communications. 2025. Vol. 16. No. 1. Art. 9434. https://doi.org/10.1038/s41467-025-64982-y
Holmes N. P., Chen Y.-S., Niu R., McGuire H., Cairney J. M., Chen E. Y.-S. Probing the near-atomic scale structure of hard biological materials with atom probe tomography: A review. Solid State and Materials Science. 2025. Vol. 39. Art. 101241. https://doi.org/10.1016/j.cossms.2025.101241
Hu H., Lin Y., Yang B., Wen X., Ma P., Loh X. J., Luo Z., Li Z., Wu Y.-L. Biomineralization-inspired functional biomaterials: From principles to practice. Chemical Engineering Journal. 2024. Vol. 504. Art. 158624. https://doi.org/10.1016/j.cej.2024.158624
Karim B., Görgen S., Athar K. M., Chauvat F., March K., Menguy N., Lopez-Adams E., Cordier L., Labarre J., Belhadj O., Duprat E., Poinsot M., El Albani A., Gérard E., Jebbar M., Benzerara K. Quantitative mapping of calcium cell reservoirs in cyanobacteria at the submicrometer scale. Journal of Electron Spectroscopy and Related Phenomena. 2023. Vol. 267. Art. 147369. https://doi.org/10.1016/j.elspec.2023.147369
Kim S. H., Ki M.-R., Han Y., Pack S. P. Biomineral-based composite materials in regenerative medicine. International Journal of Molecular Sciences. 2024. Vol. 25. No. 11. Art. 6147. https://doi.org/10.3390/ijms25116147
Li S., Li C., Gao X., Zhu M., Li H., Wang X. Biomineralization mediated by iron-oxidizing microorganisms: Implication for the immobilization and transformation of heavy metals in AMD. Minerals. 2025. Vol. 15. No. 8. Art. 868. https://doi.org/10.3390/min15080868
Lowenstam H. A., Weiner S. On biomineralization. New York: Oxford University Press, 1989. 324 p.
Micheletti C., Shah F. A. Bone hierarchical organization through the lens of materials science: Present opportunities and future challenges. Bone Reports. 2024. Vol. 22. Art. 101783. https://doi.org/10.1016/j.bonr.2024.101783
Popova E., Tkachev S., Shapoval A., Karpenko A., Lee Y., Chislov P., Ershov B., Golub D., Galechyan G., Bogoedov D., Akovantseva A., Gafarova E., Musaelyan R., Schekleina M., Clark S., Ali S., Dymov A., Vinarov A., Glybochko P., Timashev P. Kidney stones as minerals: How methods from geology could inform urolithiasis treatment. Journal of Clinical Medicine. 2025. Vol. 14. No. 3. Art. 997. https://doi.org/10.3390/jcm14030997
Sanyal S. K., Scott C., Nagaraj V., Speight R., Ahmed F. H. Harnessing the biomolecular mechanisms of marine biomineralisation for carbon sequestration. Biotechnology Advances. 2025. Vol. 83. Art. 108644. https://doi.org/10.1016/j.biotechadv.2025.108644
Sedek E. M., Holiel A. A. Next-generation strategies for enamel repair and regeneration: Advances in biomaterials and translational challenges. Tissue Engineering and Regenerative Medicine. 2025. Vol. 22. No. 6. P. 771–789. https://doi.org/10.1007/s13770-025-00725-w
Shah F. A. Revisiting the physical and chemical nature of the mineral component of bone. Acta Biomaterialia. 2025. Vol. 196. P. 1–16. https://doi.org/10.1016/j.actbio.2025.01.055
Song J.-H., Liu M.-Y., Ma Y.-X., Wan Q.-Q., Li J., Diao X.-O., Niu L.-N. Inflammation-associated ectopic mineralization. Fundamental Research. 2023. Vol. 3. No. 6. P. 1025–1038. https://doi.org/10.1016/j.fmre.2022.04.020
Trzybiński D., Ziemniak M., Olech B., Sutuła S., Góral T., Bemowska-Kałabun O., Brzost K., Wierzbicka M., Woźniak K. MicroED: Unveiling the structural chemistry of plant biomineralisation. Molecules. 2024. Vol. 29. No. 20. Art. 4916. https://doi.org/10.3390/molecules29204916
Wan J., Ji R., Liu J., Ma K., Pan Y., Lin W. Biomineralization in magnetotactic bacteria: From diversity to molecular discovery-based applications. Cell Reports. 2024. Vol. 43. No. 12. Art. 114995. https://doi.org/10.1016/j.celrep.2024.114995
Wei Y., Dang G.-P., Ren Z.-Y., Wan M.-C., Wang C.-Y., Li H.-B., Zhang T., Tay F. R., Niu L.-N. Recent advances in the pathogenesis and prevention strategies of dental calculus. npj Biofilms and Microbiomes. 2024. Vol. 10. No. 1. Art. 56. https://doi.org/10.1038/s41522-024-00529-1
Weiner S., Dove P. M. An overview of biomineralization processes and the problem of the vital effect. Reviews in Mineralogy and Geochemistry. 2003. Vol. 54. No. 1. P. 1–29. https://doi.org/10.2113/0540001
Yang W., Wang B., Ren Y., Li W., Li X. Multiscale characterization of bone mineralization reveals an amorphous–nanocrystalline apatite phase intimately associated with collagen. Materials & Design. 2026. Vol. 261. Art. 115362. https://doi.org/10.1016/j.matdes.2025.115362
Yao J., Farrar C. T., Aikawa E., Sosnovik D. E., Moon B. F., Kulkarni A., Ackerman J. L. Ex vivo phosphorus-31 solid-state magnetic resonance spectroscopy identifies compositional differences between bone mineral and calcified vascular tissues. Frontiers in Cardiovascular Medicine. 2025. Vol. 12. Art. 1689116. https://doi.org/10.3389/fcvm.2025.1689116
Zhao Q., He M., Shu J., Huang Y., Chen J., Guo W. Enzyme-regulated biomineralization: Biological functions and advanced biomaterials for tissue regeneration. Bioactive Materials. 2026. Vol. 59. P. 135–160. https://doi.org/10.1016/j.bioactmat.2025.12.041




